Class LysisWorld¶
Defined in File LysisWorld.h
Inheritance Relationships¶
Base Type¶
public SymWorld
(Class SymWorld)
Class Documentation¶
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class
LysisWorld
: public SymWorld¶ Public Functions
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~LysisWorld
()¶ Input: None
Output: None
Purpose: To destruct the data nodes belonging to LysisWorld to conserve memory.
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void SetupHosts (long unsigned int *POP_SIZE)
Definitions of setup functions, expanded in LysisWorldSetup.cc
Input: The number of bacteria.
Output: None.
Purpose: To populate the world with bacteria with appropriate phenotypes.
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void SetupSymbionts (long unsigned int *total_syms)
Input: The number of phage.
Output: None.
Purpose: To populate the world with phage with appropriate phenotypes.
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void
CreateDataFiles
()¶ Input: None.
Output: None.
Purpose: To create and set up the data files (excluding for phylogeny) that contain data for the experiment.
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void
SetupHostFileColumns
(emp::DataFile &file)¶ Input: The Empirical DataFile object tracking data nodes.
Output: None.
Purpose: To add bacterium data nodes to be tracked to the bacterium data file.
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emp::DataFile &
SetupLysisChanceFile
(const std::string &filename)¶ Input: The address of the string representing the file to be created’s name
Output: The address of the DataFile that has been created.
Purpose: To set up the file that will be used to track mean lysis chance, the number of symbionts, and the histogram of the mean lysis chance.
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emp::DataFile &
SetupInductionChanceFile
(const std::string &filename)¶ Input: The address of the string representing the file to be created’s name
Output: The address of the DataFile that has been created.
Purpose: To set up the file that will be used to track mean induction chance, the number of symbionts, and the histogram of the mean induction chance.
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emp::DataFile &
SetupIncorporationDifferenceFile
(const std::string &filename)¶ Input: The address of the string representing the file to be created’s name
Output: The address of the DataFile that has been created.
Purpose: To set up the file that will be used to track the difference between bacterium and phage incorporation values and the histogram of the difference between the incorporation vals.
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emp::DataMonitor<double, emp::data::Histogram> &
GetLysisChanceDataNode
()¶ Input: None
Output: The DataMonitor<double, emp::data::Histogram>& that has the information representing the chance of lysis for each symbiont.
Purpose: To collect data on the chance of lysis for each symbiont to be saved to the data file that is tracking the chance of lysis for each symbiont.
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emp::DataMonitor<double> &
GetBurstSizeDataNode
()¶ Input: None
Output: The DataMonitor<double>& that has the information representing the lysis burst size.
Purpose: To collect data on the lysis burst size to be saved to the data file that is tracking lysis burst size.
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emp::DataMonitor<int> &
GetBurstCountDataNode
()¶ Input: None
Output: The DataMonitor<int>& that has the information representing the lysis burst count.
Purpose: To collect data on the lysis burst count to be saved to the data file that is tracking lysis burst count.
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emp::DataMonitor<double, emp::data::Histogram> &
GetInductionChanceDataNode
()¶ Input: None
Output: The DataMonitor<double, emp::data::Histogram>& that has the information representing the chance of induction for each symbiont.
Purpose: To collect data on the chance of induction for each symbiont to be saved to the data file that is tracking chance of induction for each symbiont.
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emp::DataMonitor<double, emp::data::Histogram> &
GetIncorporationDifferenceDataNode
()¶ Input: None
Output: The DataMonitor<double, emp::data::Histogram>& that has the information representing the difference between incorporation vals for bacteriums and their phage
Purpose: To collect data on the difference between incorporation vals for each bacteria and their phage to be saved to the data file that is tracking incorporation val differences.
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emp::DataMonitor<int> &
GetCFUDataNode
()¶ Input: None
Output: The DataMonitor<int>& that has the information representing the number of colony forming units.
Purpose: To collect data on the CFU count to be saved to the data file that is tracking CFU
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